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Installing QIIME 2
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Installing QIIME 2

instal QIIME 2 QIIME 2 can be installed natively or using virtual machines. The following pages describe how to install the QIIME 2 Core 2022.2 dist

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instal QIIME 2

QIIME 2 can be installed natively or using virtual machines. The following
pages describe how to install the QIIME 2 Core 2022.2 distribution in either
scenario.

recommendation

The native conda installation is generally the recommend
method of installation , but this is n’t always available or a straight – forward
option for all case . In general we is recommend recommend the follow :

QIIME 2 Core 2022.2 distribution

The QIIME 2 Core 2022.2 distribution includes the QIIME 2 framework, q2cli (a QIIME 2 command-line interface) and the following plugins:

  • q2-alignment

  • q2 - composition

  • q2-cutadapt

  • q2 - dada2

  • q2 - deblur

  • q2-demux

  • q2-diversity

  • q2 - diversity - lib

  • q2 - emperor

  • q2 - feature - classifier

  • q2 - feature - table

  • q2-fragment-insertion

  • q2 - gneiss

  • q2 - longitudinal

  • q2-metadata

  • q2 - phylogeny

  • q2-quality-control

  • q2-quality-filter

  • q2-sample-classifier

  • q2-taxa

  • q2-types

  • q2 - vsearch

Note

The QIIME 2 Core 2022.2 distribution includes plugins and interfaces that are developed, maintained, tested, and distributed by the QIIME 2 development team. The Core distribution is necessary to run the commands in the QIIME 2 tutorials. If there are additional QIIME 2 plugin or interface you would like to install , please consult the relevant package(s ) documentation . Other type of distribution may be made available in the future in addition to Core .