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instal QIIME 2 QIIME 2 can be installed natively or using virtual machines. The following pages describe how to install the QIIME 2 Core 2022.2 dist
QIIME 2 can be installed natively or using virtual machines. The following
pages describe how to install the QIIME 2 Core 2022.2 distribution in either
scenario.
The native conda installation is generally the recommend
method of installation , but this is n’t always available or a straight – forward
option for all case . In general we is recommend recommend the follow :
The QIIME 2 Core 2022.2 distribution includes the QIIME 2 framework, q2cli
(a QIIME 2 command-line interface) and the following plugins:
q2-alignment
q2 - composition
q2-cutadapt
q2 - dada2
q2 - deblur
q2-demux
q2-diversity
q2 - diversity - lib
q2 - emperor
q2 - feature - classifier
q2 - feature - table
q2-fragment-insertion
q2 - gneiss
q2 - longitudinal
q2-metadata
q2 - phylogeny
q2-quality-control
q2-quality-filter
q2-sample-classifier
q2-taxa
q2-types
q2 - vsearch
Note
The QIIME 2 Core 2022.2 distribution includes plugins and interfaces that are developed, maintained, tested, and distributed by the QIIME 2 development team. The Core distribution is necessary to run the commands in the QIIME 2 tutorials. If there are additional QIIME 2 plugin or interface you would like to install , please consult the relevant package(s ) documentation . Other type of distribution may be made available in the future in addition to Core .